About MassVision

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MassVision is a module developed in 3D Slicer platform for end-to-end AI-driven analysis of Mass Spectrometry Imaging (MSI) data.

The functionalities include data exploration via various targeted, untargeted, and local-contrast visualization, co-localization with reference modality like histopathology annotations, dataset curation with spatial- and spectral-guidance, multi-slide dataset merge via feature alignment, spatial and spectral filtering, statistical analysis, AI model training and validation, and whole-slide MSI model deployment.

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How to Cite

Thank you for choosing MassVision for your study! Please cite the following MassVision paper in your publications:

Jamzad, A.; Warren, J.; Syeda, A.; Kaufmann, M.; Iaboni, N.; Nicol, C.; Rudan, J.; Ren, K.; Hurlbut, D.; Varma, S.; Fichtinger, G.; Mousavi, P. MassVision: An Open-Source End-to-End Platform for AI-Driven Mass Spectrometry Imaging Analysis. Analytical Chemistry 2025. https://doi.org/10.1021/acs.analchem.5c04018.